Write reduction information to a h5 file

Write reduction information to a h5 file

Get a reductions list

write_reductions(h5_file, reductions, ...)

guess_reductions(seurat)

Arguments

h5_file

Path to h5 file
reductions

A list of cell coordinates
...

Arguments passed to guess_reductions
seurat

Seurat object

Details

Creates a list of 2D and 3D coordinates for reductions in seurat.

Functions

  • write_reductions: Write coordinates for reductions to h5 file

  • guess_reductions: Create a list of coordinates for reductions