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  • faidx
scamp
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  • usage guides
    • quickstart
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  • modules
    • cell_ranger
      • count
      • mkref
    • cell_ranger_arc
      • count
      • make_libraries_csv
      • mkref
    • cell_ranger_multi
      • count
      • make_input_csv
    • R
      • biomaRt
        • get_mart
      • GenomeInfoDB
        • convert_fai_to_seqinfo
      • GenomicRanges
        • convert_gtf_to_granges
      • Seurat
        • make_assay
        • make_object
        • percentage_feature_set
        • write_10x_counts_matrices
      • Signac
        • make_chromatin_assay
    • samtools
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      • cat
  • workflows
    • genome_preparation
    • quantification
      • cell_ranger
      • cell_ranger_arc
      • cell_ranger_multi
    • seurat
      • prepare
        • cell_ranger
        • cell_ranger_arc
  • utilities
    • check_for_matching_key_values
    • concat_workflow_emissions
    • concatenate_maps_list
    • convert_map_keys_to_files
    • format_unique_key
    • make_map
    • make_string_directory_safe
    • merge_metadata_and_process_output
    • merge_process_emissions
    • pluck
    • print_as_json
    • remove_keys_from_map
    • rename_map_keys
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