make_assay
Writes assay objects as RDS files for a specified assay type.
moduleInputs
| Channel name | Description | Type |
|---|---|---|
opt | A map of task-specific variables. | map |
tag | A unique identifier to use in the tag directive. | string |
feature_type | Type of feature in the counts matrices from which an assay should be created. This should be one of the feature types in the features.tsv.gz file (column 3), for example “Gene Expresssion”, “Peaks”, etc. | string |
counts_matrices.rds | The RDS object that contains a list of the counts matrices for the dataset. | file |
Outputs
| Emission name | Description | Type | Filename pattern |
|---|---|---|---|
opt | A map of task-specific variables. | map | |
task | YAML-formatted file of task parameters and software versions used by the task. | file | task.yaml |
assay | RDS file of the assay object created from the counts matrix for the feature type. | file | assay.rds |
Tools
r
R is a free software environment for statistical computing and graphics.
Homepage Documentationseurat
Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data. Seurat aims to enable users to identify and interpret sources of heterogeneity from single-cell transcriptomic measurements, and to integrate diverse types of single-cell data.
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